rs30101822 SNP Detail

Summary

• ID
  rs30101822
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59252075 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGACCCGG GACCACCAGC
  GCCAACCCAG GCTCGCCTGC GAGTTTGCTC CTCCTGTGCT GGTAAGCCCT GGGCTTTTCC
  TGTCTGGTGG CAGGCTCTGT GGCCCGGGCT GGCTCAGGGG CTACAAATTC TTTCCTTTCG
  TGACCTCTCC CATCTCCTAA CAGGGGGAGG GGGAACCTAG ACATAAAAAT AGGAGAGGTA
  M
  TATTGCAGGG AAGGAAAAGG ATTAAGCTTG GGTGGGTGAG TGAGCAGATG ATGCCCAGGA
  GAAGGTAAAG GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTTGGGGGCG GGGCAGAGGG GGCTGGGGCT GGTAGTGGTG CCAAATATGC
  TGACAGCATG TGATATACTT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600528	NES12904276	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30101822					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600528	NES12904276	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59252075 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13208	CpG island 13208	144 bp distal
Gm38186	predicted gene, 38186	within coordinates
Igsf10	immunoglobulin superfamily, member 10	mRNA-UTR
Rr577348	regulatory region 577348	506 bp distal
Rr577349	regulatory region 577349	386 bp distal
Rr577350	regulatory region 577350	271 bp distal
Rr577351	regulatory region 577351	within coordinates
Tssr33412	transcription start site region 33412	663 bp upstream
Tssr33413	transcription start site region 33413	608 bp upstream
Tssr33414	transcription start site region 33414	578 bp upstream
Tssr33415	transcription start site region 33415	554 bp upstream
Tssr33416	transcription start site region 33416	489 bp upstream
Tssr33417	transcription start site region 33417	287 bp upstream
Tssr33418	transcription start site region 33418	232 bp upstream
Tssr33419	transcription start site region 33419	205 bp upstream