rs30101823 SNP Detail

Summary

• ID
  rs30101823
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59251201 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATGCACC TTAAGAGTTA
  GTTATAAGAG AAGAGAGCCG TAAATGAATA CCACATGAGT TCCCGTACAC TTAAGCCTCA
  AACTGTATTT AACAAAAGAG TTGGCAATAC CTGAGCTCTT CTGTCTTGCT TTTGAATCCT
  CTTGTAACAT AAGCAGAGAC AGGAAATCTT CTGAGGAGAG CCTTCACCTG ATTGAAGGAA
  M
  GTTCTTTGCT TCCAACGGGA GCAAAAGGCT TAGTAGGCTT AGTCTTCACT AGCTGGGGGA
  CTGACTCTTC AGAGAACTGG AGGCGCTTCT GTTATTTTAA TGGTATCATA CATTTCCAAA
  CTAACCAAAG CTTTCCTTTA TCTGATTGCT GCTGCTGCTG CTGCTGCTGG AATGCTCTTC
  CTTCTCCCTC AATAGTATAG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600529	NES12904274	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30101823					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600529	NES12904274	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59251201 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13208	CpG island 13208			519 bp proximal
Gm38186	predicted gene, 38186			310 bp upstream
Igsf10	immunoglobulin superfamily, member 10			Intron
				mRNA-UTR
Rr577347	regulatory region 577347			1838 bp distal
Rr577348	regulatory region 577348			within coordinates
Rr577349	regulatory region 577349			369 bp proximal
Rr577350	regulatory region 577350			489 bp proximal
Rr577351	regulatory region 577351			604 bp proximal
Tssr33412	transcription start site region 33412			201 bp downstream
Tssr33413	transcription start site region 33413			233 bp downstream
Tssr33414	transcription start site region 33414			271 bp downstream
Tssr33415	transcription start site region 33415			298 bp downstream
Tssr33416	transcription start site region 33416			372 bp downstream
Tssr33417	transcription start site region 33417			566 bp downstream
Tssr33418	transcription start site region 33418			590 bp downstream
Tssr33419	transcription start site region 33419			658 bp downstream