rs30101954 SNP Detail

Summary

• ID
  rs30101954
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATTTGTAG GCAGCTAGAC
  TATCCGTTCA TGCTTTTTAG TATCTTCCTT TTCACATTTT TAAAAAAAAA AAAACAGAAT
  ATTCTAACTT TTATAGATCA AGCTAGTTAG ATCAGTGGTT ACATTTAAAA ATTTATCTAA
  ACTTAAGTTG TTTGGATTCC TCTCTTTCTT GTCGTTTCTC TCACTTCCTT CATCTCACTC
  Y
  CTGAGAATGC TTTTTATCTC TCCTAACCAA AAGCTACACA TTACCGAAAA ATTTGAACCT
  CATGTAAGCG TGCAAGGCAT AATGAAATCG ATTGCTGAGG ACAGTGTGGC TTTAAAGTGT
  TAGCTCCTTG TTTCGAACAT TGTCAATATT TTGGCATTGC TCATAGGGAG TATTGCTGCT
  TCTCATGATT CCATGAGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
ss49101722	NES12439493	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	C	C	C	C		C	C	T		T
ss324322203	CHEV_13_39161314	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	SM/J	WSB/EiJ
rs30101954					SNP	T	C	C	C	C	C	C	C	C	C	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49101722	NES12439493	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253421 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	within coordinates
Rr388296	regulatory region 388296	within coordinates