rs30101956 SNP Detail

Summary

• ID
  rs30101956
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:39253220 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTCGTAACG TGTCTGAGTC
  TTGGAAAGTA TGCACTGGGA GGAAGGCAGG AATAATATGC ACCGAGAGTG TCTATATCCA
  CATCACATGC CTACTTCCTT ATTGCCCTCA ACCTACAGCT CTTGGAGTCC TCCAGAGTCT
  CAATTCCAAG GTAAGTTATA CAAAAGAAAG AGTGAAAAGG TGTGTTTGTG AAAATAAAAA
  Y
  AGATTTGTAG GCAGCTAGAC TATCCGTTCA TGCTTTTTAG TATCTTCCTT TTCACATTTT
  TAAAAAAAAA AAAACAGAAT ATTCTAACTT TTATAGATCA AGCTAGTTAG ATCAGTGGTT
  ACATTTAAAA ATTTATCTAA ACTTAAGTTG TTTGGATTCC TCTCTTTCTT GTCGTTTCTC
  TCACTTCCTT CATCTCACTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
ss49101724	NES12439487	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	C	C	C	C	C		C	T
ss148902904	ENSMUSSNP1337859	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C					C
ss324322199	CHEV_13_39161113	CHEVERUD	SCREENING_POP	f	SNP											C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	PWD/PhJ	SM/J
rs30101956					SNP	T	T	C	C	C	C	C	C	C	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49101724	NES12439487	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:39253220 () rs orientation: forward

Symbol	Name	Function Class
Gm60523	predicted gene, 60523	within coordinates
Rr388296	regulatory region 388296	69 bp upstream