rs30102597 SNP Detail

Summary

• ID
  rs30102597
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:55519749 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ACCATTCCTT GCTGAGGCGC TGTCAATCAT GAGCCTCATC
  CTTCTGGCAG TCAGCTGTCA CTTAGAGAGG CTCCTAACCC CTCCCAGAGA AATCGTCTCT
  Y
  GGTACCAGCT GTCACTTGGC TTGTGCATTC ACTCAGGGGC TCCTCTGGGT CGTCCCACCC
  TGAGCCCTTA AGACCCAGGT CCCAGTCCCC AGTTAGCAC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss39150509	mCV24553781	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss61806358	NES17743857	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	C	C	C		C	C	T	T		C	T	C	C		C
ss149036069	ENSMUSSNP6772987	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss324345359	CHEV_13_55473297	CHEVERUD	SCREENING_POP	f	SNP												C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30102597					SNP	C	C	T	C	C	C	T	C	C	T	T	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61806358	NES17743857	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:55519749 () rs orientation: forward

Symbol	Name	Function Class
Rgs14	regulator of G-protein signaling 14	within coordinates
Rr480446	regulatory region 480446	1470 bp distal
Rr480447	regulatory region 480447	329 bp distal