rs30102704 SNP Detail

Summary

• ID
  rs30102704
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59250845 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAGTCTCT GACTTTGCAG
  GCATAACACT GTCTGCTCTT TCTCTGCTTG GAAACACCCC TCTGCTTACT GACACAGTGA
  TGGGGAGCAT GGCCAAGGAA GAATTCTGCT TCTCTTGTTA GAAAATATCT TTAACCCGCA
  CGTGGCGAAG GCTCAGTGAT CCCTCCCAAC CTGGAGCTGT TATGAATGAG TTTAACCCAA
  R
  TTAAGATTTA CTAATGATTA CTTCTATGCC TACACTGTCA CTGTTACATC ACTGAATATT
  TTTGAATACT CTCTGCGTGA TGATTAAAAA GCAGATGAGC TTGCTATTAT TAGATAAACA
  AAGATGGTAC AAGGTAGCTG GGAAACAGAA GAGACTATAT GCACCTTAAG AGTTAGTTAT
  AAGAGAAGAG AGCCGTAAAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600530	NES12904273	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30102704					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600530	NES12904273	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59250845 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13208	CpG island 13208			875 bp proximal
Gm38186	predicted gene, 38186			666 bp upstream
Igsf10	immunoglobulin superfamily, member 10			Intron
				mRNA-UTR
Rr577347	regulatory region 577347			1482 bp distal
Rr577348	regulatory region 577348			within coordinates
Rr577349	regulatory region 577349			725 bp proximal
Rr577350	regulatory region 577350			845 bp proximal
Rr577351	regulatory region 577351			960 bp proximal
Tssr33412	transcription start site region 33412			557 bp downstream
Tssr33413	transcription start site region 33413			589 bp downstream
Tssr33414	transcription start site region 33414			627 bp downstream
Tssr33415	transcription start site region 33415			654 bp downstream
Tssr33416	transcription start site region 33416			728 bp downstream
Tssr33417	transcription start site region 33417			922 bp downstream
Tssr33418	transcription start site region 33418			946 bp downstream
Tssr33419	transcription start site region 33419			1014 bp downstream