rs30102708 SNP Detail

Summary

• ID
  rs30102708
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59249766 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTGATTAG CCCAATTGAT
  TTCCAGTTGC ATCCATTTCC TGCATATGTC ATGATTTCAC TCTTTTATGG CCACATGGGA
  CTCTGTTGTA CACATTTCCA CATTTTCTTT ATCCGTTCAT ATTTTGACGG CTACGTAAGT
  TGGTTCCACA TTCTTGGCTG TCGTGAATAA TGAACAATGT AGCAATAAAT TCTGTGCAGA
  Y
  TTCTCTTTGT TACATACCCA GTAATGGATT GGTAGTTCTA GTTTCAGAGG TTTTTTGTTT
  GTTTGTTTGT TTTTTGTTTT TTGGAATTCC ATAAGAACTG CAAAAAAATT AACACCATCC
  CCCAATTATC CAATAAATGA ATAGACTAGT GAACTGAAAG AAAGACCTGA AAGATTGTTC
  AGGGCATCCA AATTGACATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600534	NES12904267	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30102708					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600534	NES12904267	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59249766 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi13208	CpG island 13208			1954 bp proximal
Gm38186	predicted gene, 38186			1745 bp upstream
Igsf10	immunoglobulin superfamily, member 10			Intron
				mRNA-UTR
Rr577347	regulatory region 577347			403 bp distal
Rr577348	regulatory region 577348			686 bp proximal
Rr577349	regulatory region 577349			1804 bp proximal
Rr577350	regulatory region 577350			1924 bp proximal
Tssr33412	transcription start site region 33412			1636 bp downstream
Tssr33413	transcription start site region 33413			1668 bp downstream
Tssr33414	transcription start site region 33414			1706 bp downstream
Tssr33415	transcription start site region 33415			1733 bp downstream
Tssr33416	transcription start site region 33416			1807 bp downstream