rs30102709 SNP Detail

Summary

• ID
  rs30102709
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:59249503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAGTTAGC ATACAAATTA
  ATGCATTTCA TCCTGGCACC TATGTTACTA TGCTTCGTTC TTATTAACTC CTCTCATTGC
  TTTCTCTCCT ACCCACCCCA GCTAGCTTGT TTTTGCTTTA CATGCATGCC TTTATACACA
  CTCACAGATT AGAATAGTGT ATAACTAAAT AAAATTCTAA ACACACATGC GCACGTACAA
  S
  TGTAAATCTA GCTTCTGTTT GTCAGAGAAG CTACACGGTG TTTCCTTTTT GAGTCTGTCT
  TGTTTTGATT AGCCCAATTG ATTTCCAGTT GCATCCATTT CCTGCATATG TCATGATTTC
  ACTCTTTTAT GGCCACATGG GACTCTGTTG TACACATTTC CACATTTTCT TTATCCGTTC
  ATATTTTGAC GGCTACGTAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49600535	NES12904266	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30102709					SNP	G	G	G	G	G	G	G	G	G	G	C	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49600535	NES12904266	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:59249503 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Igsf10	immunoglobulin superfamily, member 10			Intron
				mRNA-UTR
				Splice-Site
Rr577347	regulatory region 577347			140 bp distal
Rr577348	regulatory region 577348			949 bp proximal
Tssr33412	transcription start site region 33412			1899 bp downstream
Tssr33413	transcription start site region 33413			1931 bp downstream
Tssr33414	transcription start site region 33414			1969 bp downstream
Tssr33415	transcription start site region 33415			1996 bp downstream