rs30103079 SNP Detail

Summary

• ID
  rs30103079
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146472429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCACTCAT TTCCTCACAA
  GCTTCATCCC AGGAAATCAG TGAGGATGAA ATGGTTGCTT CTCTTACTGG AAGGCAAGTA
  ATCCAGAGCA CAATCCGCTC TAGAACAGTC CTCATCGGAC AGAGGTCCGT CCTCACTGGG
  GGCAAAAGCA GCGCTTTCAG TGTTCGGCTC ATGTGTTCTC GGTCAGACAG AGGAGAGGGC
  R
  TGAACCAGCT GCTCACTCCT GCTTAGGTCC ACACACTTCC GAGAACCATT ACTTAGTGCT
  TTTTCTTCAC ACTGACGCTC AGTGAGCTGC ACCAGGAAGC AGGCTCCCCG AGCAGCCTAG
  AATTTGTACA TATCTGCAGT GTGTCACATG ATGTTTCCAT AAGTGGATGT CCTGTGTGAT
  GTGCAAATCA GAGTGAGCGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45394612	mCV25106395	ABI	CRAMUS_MOUSE	f	SNP		G	G					G		A
ss47030624	NES10852811	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	G	G		G	A	G	G		G	A	G	G		G
ss136046211	ENSMUSSNP4018277	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G							A
ss321011063	CHEV_3_146429638	CHEVERUD	SCREENING_POP	f	SNP													A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30103079					SNP	G	G	G	A	G	G	G	G	G	A	G	G	A	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47030624	NES10852811	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146472429 () rs orientation: forward

Symbol	Name	Function Class
Gm40170	predicted gene, 40170	within coordinates
Prkacb	protein kinase, cAMP dependent, catalytic, beta	Intron
Rr375878	regulatory region 375878	1578 bp upstream
Rr587080	regulatory region 587080	1243 bp distal
Rr587081	regulatory region 587081	within coordinates