rs30103972 SNP Detail

Summary

• ID
  rs30103972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132794560 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGCTTTAAAT ATTATCCGAC TCCTACATTT ATTTCAGGCA
  CATCTTGCCT GAGCTCCAGG CTCGACATTT CAATTGGGTA TTTTTCTAAA TGTGTTCATT
  Y
  TTCTTTCCTG GCCCCATTGC TGATGAAATA GCAACACCAT TCACCTACCT CCAAGCCTAA
  AGTCTCACCC AATTCCTTCA TCTCTCACAC CTGCTATCT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
ss45395117	mCV25027885	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	C
ss135916522	ENSMUSSNP998757	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	MSM/Ms
rs30103972					SNP	C	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132794560 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gstcd	glutathione S-transferase, C-terminal domain containing			Intron
				Noncoding-Transcript-Variant
Rr585500	regulatory region 585500			1665 bp proximal