rs30104389 SNP Detail

Summary

• ID
  rs30104389
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:31218920 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACAGA GAAATCCCTG TCTCGAACCC
  Y
  CCTCCCCCCC CCCCCAAAAA AAGAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss39150766	mCV24421435	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30104389					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:31218920 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6292	CpG island 6292	1205 bp distal
Eaf1	ELL associated factor 1	within coordinates
Mettl6	methyltransferase 6, methylcytidine	1923 bp upstream
Rr296978	regulatory region 296978	within coordinates
Tssr124944	transcription start site region 124944	1868 bp downstream
Tssr124945	transcription start site region 124945	1782 bp downstream
Tssr124946	transcription start site region 124946	540 bp downstream
Tssr127966	transcription start site region 127966	1978 bp upstream
Tssr127967	transcription start site region 127967	1909 bp upstream