rs30106053 SNP Detail

Summary

• ID
  rs30106053
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:100097791 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  GATGTATACA CACAAAAGCT CCGTTTCATT TATAGCGAAG GAGGACACAA AAGGACATAA
  CTGAGTGCAG GATGCAGCGT TTGCATCAGG CCTGGAAAAC CTTGCATTTC CAGGCTGAAC
  AATGGGCTTT ATCCAAATAT GTTAGTTATT GAACTTTTTT AAATTATTTC TTTTATTTTT
  ATTGGAACTA GATTCTCCTC ATACCAACCA CAGCCCCCCA CACTCCTCCC AGCTCCCTCT
  TAACGTCCCT CTCCCCCAGA GCCACTCTCC CTCTCTCCTC AGAAAAGAGC AAGCCTCCAA
  R
  AGACAACAGC CAAACAGGAC AAAACAAGAT ACGATAAGAC AAAAGCCCTC ATGTTAAACA
  GGACAGGGCA ACCCAACAGA GGTTTTTCTT GTTACATTTT TGTAGTAAGG AAAAATAAGA
  ATATTCTTTA ATTATGTTGT TTTGAATACT TGATGTTGTA GCCACTTATC TATATAGTCT
  TTACTTACAG TGAGAATTTT TTCAAGTCAT TGCTATATAC ACGTCTTCTC ATTAATGCAC
  CTCTATCAAT GGCTTGCAGT TCTGCATGGG GCAGTGGCCT CTAACTCTTT GTTGTAATGA
                                                                   
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45395918	mCV23824930	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30106053					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:100097791 () rs orientation: forward

Symbol	Name	Function Class
Gdap2	ganglioside-induced differentiation-associated-protein 2	within coordinates
Rr64421	regulatory region 64421	391 bp distal
Rr69692	regulatory region 69692	191 bp distal
Rr82369	regulatory region 82369	634 bp distal