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rs30106053 SNP Detail
Summary
  • ID
    rs30106053
  • Variation Type
    SNP
  • Alleles
    A/G
Genome Location and Flanking Sequence
  • Location
    Chr3:100097791 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                                     
    GATGTATACA CACAAAAGCT CCGTTTCATT TATAGCGAAG GAGGACACAA AAGGACATAA
    CTGAGTGCAG GATGCAGCGT TTGCATCAGG CCTGGAAAAC CTTGCATTTC CAGGCTGAAC
    AATGGGCTTT ATCCAAATAT GTTAGTTATT GAACTTTTTT AAATTATTTC TTTTATTTTT
    ATTGGAACTA GATTCTCCTC ATACCAACCA CAGCCCCCCA CACTCCTCCC AGCTCCCTCT
    TAACGTCCCT CTCCCCCAGA GCCACTCTCC CTCTCTCCTC AGAAAAGAGC AAGCCTCCAA
    R
    AGACAACAGC CAAACAGGAC AAAACAAGAT ACGATAAGAC AAAAGCCCTC ATGTTAAACA
    GGACAGGGCA ACCCAACAGA GGTTTTTCTT GTTACATTTT TGTAGTAAGG AAAAATAAGA
    ATATTCTTTA ATTATGTTGT TTTGAATACT TGATGTTGTA GCCACTTATC TATATAGTCT
    TTACTTACAG TGAGAATTTT TTCAAGTCAT TGCTATATAC ACGTCTTCTC ATTAATGCAC
    CTCTATCAAT GGCTTGCAGT TCTGCATGGG GCAGTGGCCT CTAACTCTTT GTTGTAATGA
                                                                     
    
    R = A/G
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
ss45395918 mCV23824930 ABI CRAMUS_MOUSE f SNP G G A G
SNP Consensus Information
SNP Consensus Type
129X1/SvJ
A/J
C57BL/6J
DBA/2J
rs30106053 SNP G G A G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr3:100097791 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gdap2 ganglioside-induced differentiation-associated-protein 2 within coordinates
Rr64421 regulatory region 64421 391 bp distal
Rr69692 regulatory region 69692 191 bp distal
Rr82369 regulatory region 82369 634 bp distal

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory