rs30107313 SNP Detail

Summary

• ID
  rs30107313
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:64018191 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAAAGAAGA AGAGAATGAG
  CAGAATGAAA ACAAGAAACA GTTGAAATTG AAAAGACAGT TGGTTACAGT TGAGACAGGA
  GGAGCTGAAC TGAGTCAGAG AAGATATTGT TAGTGACAGA TAGAAGAAGC ACCTGCAAAG
  AACCTACAAA GTAGCTAAAA AAGAAAAAAA AAGAAAGATA TAAAACTACA CTAGTTAGTC
  W
  TATTAAATAT TATCATCAGA GATTGAAGAA ACATCATCAA TCATGGTGTT TTTATGTATG
  CAGATTCCAC AGAAAACACA AACTTATGAT TTCTTTTTAG TTAAAGATTA AATATTAAAG
  GTCAGCTGTC GTCTCTGCTT CATTCATCCT TACCCACCTC TGTCTAATCC CTATCTTTTC
  TGCTGGAAAC TGCCTGACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602249	NES12897291	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30107313					SNP	T	T	T	T	T	A	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602249	NES12897291	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64018191 () rs orientation: forward

Symbol	Name	Function Class
Gm22165	predicted gene, 22165	1033 bp downstream
Gm65036	predicted gene, 65036	within coordinates
Gm65038	predicted gene, 65038	1337 bp upstream
Vmn2r1	vomeronasal 2, receptor 1	1286 bp downstream