rs30107664 SNP Detail

Summary

• ID
  rs30107664
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:87753345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCATT TCTAAATACT GTTAAATACT
  W
  TGGTGTAGGT CATAGGATCT GGTTT                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45396418	mCV23485258	ABI	CRAMUS_MOUSE	f	SNP		T	A					T	A
ss51575837	NES14668894	PERLEGEN	MM_PANEL2	f	SNP	T		A	A	A	A	A			A	A		A	A	A		T
ss135468462	ENSMUSSNP4871952	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	A						A
ss320835408	CHEV_3_87649960	CHEVERUD	SCREENING_POP	f	SNP												A				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30107664					SNP	T	T	A	A	A	A	A	T	A	A	A	A	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51575837	NES14668894	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87753345 () rs orientation: forward

Symbol	Name	Function Class
Rr367451	regulatory region 367451	835 bp upstream
Rr579558	regulatory region 579558	1872 bp distal
Rr579559	regulatory region 579559	227 bp proximal
Sh2d2a	SH2 domain containing 2A	717 bp upstream
Tssr29832	transcription start site region 29832	739 bp downstream
Tssr29833	transcription start site region 29833	687 bp upstream
Tssr29834	transcription start site region 29834	740 bp upstream
Tssr29835	transcription start site region 29835	802 bp upstream
Tssr29836	transcription start site region 29836	843 bp upstream
Tssr29837	transcription start site region 29837	950 bp upstream
Tssr29838	transcription start site region 29838	966 bp upstream
Tssr29839	transcription start site region 29839	1098 bp upstream
Tssr33958	transcription start site region 33958	551 bp downstream
Tssr33959	transcription start site region 33959	749 bp downstream
Tssr33960	transcription start site region 33960	846 bp downstream