rs30108141 SNP Detail

Summary

• ID
  rs30108141
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:130370099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACTA AGCCAGGCGT TGGTGGCGCA
  Y
  GCCTTTAATC CCAGCACCTG GGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45396792	mCV24294394	ABI	CRAMUS_MOUSE	f	SNP	T	T	C
ss135896436	ENSMUSSNP4504414	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320965607	CHEV_3_130279368	CHEVERUD	SCREENING_POP	f	SNP				C	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30108141					SNP	T	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:130370099 () rs orientation: forward

Symbol	Name	Function Class
Col25a1	collagen, type XXV, alpha 1	Intron
Cpgi13824	CpG island 13824	971 bp distal
Rr585176	regulatory region 585176	1487 bp distal
Rr585177	regulatory region 585177	344 bp proximal
Rr585178	regulatory region 585178	433 bp proximal