rs30108144 SNP Detail

Summary

• ID
  rs30108144
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:64018119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATT GTTAGTGACA GATAGAAGAA
  S
  CACCTGCAAA GAACCTACAA AGTAG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45401386	mCV22705030	ABI	CRAMUS_MOUSE	f	SNP		G	C					G
ss49602250	NES12897290	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	G	G		C	C	C	G	G	C	C	C	G
ss135244644	ENSMUSSNP3244169	ENSEMBL	ENSEMBL_Sanger	f	SNP			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30108144					SNP	G	G	C	C	C	G	G	G	C	C	C	G	G	C	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602250	NES12897290	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64018119 () rs orientation: forward

Symbol	Name	Function Class
Gm22165	predicted gene, 22165	961 bp downstream
Gm65036	predicted gene, 65036	within coordinates
Gm65038	predicted gene, 65038	1409 bp upstream
Rr72617	regulatory region 72617	1282 bp proximal
Vmn2r1	vomeronasal 2, receptor 1	1214 bp downstream