rs30108146 SNP Detail

Summary

• ID
  rs30108146
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:64015884 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GACATTGTCC CATGAAAATA
  AAATTTTAGT AACAAAGTTA GTTTGCCTAA AGTAACCCTT AATAATACAT ATAGGTGACC
  TGAAATTAAT ATAAAAGAAA TATAAGAATT TTCCAATCAC GAGGAGAGTG GCTCATATTA
  AATTACAGTG AAGTCTTTTC ACTAAAAAAC CAAGAAAAAG CAAATTAATA GAACTGCTCA
  K
  CCGGTAGTGT GGGAACCTTT CAGACTTTTC AGCTAGGTGA CCTTACAAGC TATACTTCCA
  GCACACTGTG GTAGTCAAGC CCTGGGAACT TATCTAGACT GACTCAGGAA TGTTTTTTAA
  GTGTTTAATG TTTTACTTTC CTGAAGAATA GAATGTCATA TGTCATAAAT GCTCACATAG
  TCTAAAATGA TTTGAGAATC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss49602252	NES12897353	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30108146					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49602252	NES12897353	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:64015884 () rs orientation: forward

Symbol	Name	Function Class
Gm22165	predicted gene, 22165	1174 bp upstream
Gm65036	predicted gene, 65036	within coordinates
Vmn2r1	vomeronasal 2, receptor 1	within coordinates