rs30108354 SNP Detail

Summary

• ID
  rs30108354
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15196998 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGGGGAAG CGGGGGATAA
  TTGTGGCCAG GAGGGGGTAA AAGAGGGAGG CTAGCTGGAC CTTCTTCCTT CTTTAGCCTG
  ATCCCCACTT CTAGGAAAAC TTTGGGGGGG AAAATAGGAA GGGGAGGGAG AGCTGTCGGT
  GGGGGCGAAA TACTCCCAAC TTACCCTCTG GCGGAGCGGG CCCGCGGGCC CCGGCGGGCG
  S
  GAGGGAGGGC CGGCGGGAGG GCGGGGCGGT GTCGCTTCAC TAGGTAATGC CAGAGGAGCG
  GTGCCCCCTC CACCTCCCCC TCATTGCCCC CCGGAGCCGG GGGATCCGGG AGGCTGCTGC
  AGTGAGCCGG CCGCGGGTGC TGCTGCGAGG AGCCGGTGTC CGGGACCGCC CGGAGCAGGC
  AGGTTAATGA GCTGGGTGGA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39647114	mCV25032242	ABI	CRAMUS_MOUSE	f	SNP	G	C	G	G
ss146654517	ENSMUSSNP918836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	C		G
ss325532713	CHEV_18_15222450	CHEVERUD	SCREENING_POP	f	SNP					C	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30108354					SNP	G	C	G	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15196998 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9734	CpG island 9734	within coordinates
Gm58434	predicted gene, 58434	63 bp upstream
Kctd1	potassium channel tetramerisation domain containing 1	within coordinates
Rr393314	regulatory region 393314	1674 bp upstream
Rr534350	regulatory region 534350	within coordinates
Tssr152510	transcription start site region 152510	324 bp upstream
Tssr152511	transcription start site region 152511	286 bp upstream
Tssr152512	transcription start site region 152512	136 bp downstream
Tssr152513	transcription start site region 152513	177 bp downstream
Tssr152514	transcription start site region 152514	203 bp downstream
Tssr152515	transcription start site region 152515	257 bp downstream
Tssr152516	transcription start site region 152516	370 bp downstream
Tssr152517	transcription start site region 152517	402 bp downstream
Tssr152518	transcription start site region 152518	422 bp downstream
Tssr152519	transcription start site region 152519	480 bp downstream
Tssr152520	transcription start site region 152520	506 bp downstream