rs30109138 SNP Detail

Summary

• ID
  rs30109138
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152100214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTTTCTCT CTTATGTTTA
  CATATTAGTG CCGGGTGGTG GTGGTGCACG CCTTTACTCC CAGCACTCGG GAGGCAGAGG
  CAGGCAGATT TTTGATTTTG AGGCCAGCCT GGTCTACAAA GTGAGTTCCA GGCCAGCATG
  GGCTACACAG AGAAACCCTC TCTCGAAAAA CCAACAAAAC AAAACGTTTG CGTATTAGTG
  Y
  GGTGGTACCA TTCCCACGGA AGAGAAAGGG AAAGTAAACC TGTGGGGACC TTTATCGTTA
  CAACCATCGT TCTCTTGGAA ACGGATGACA GTCCAATAAT GGCGCGCGCG TGCGTGCGTG
  CGTGCGTGCG TGCGTGCGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGGC TAGACAATGC
  TCCCAGCAGC AGATAAATTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss45394876	mCV23507495	ABI	CRAMUS_MOUSE	f	SNP	T	T	C	C
ss136102881	ENSMUSSNP6313666	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C
ss321028813	CHEV_3_152057541	CHEVERUD	SCREENING_POP	f	SNP					C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30109138					SNP	T	T	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152100214 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13949	CpG island 13949	within coordinates
Cpgi13950	CpG island 13950	718 bp proximal
Gm43857	predicted gene 43857	337 bp upstream
Gm66519	predicted gene, 66519	within coordinates
Rr587540	regulatory region 587540	830 bp distal
Rr587541	regulatory region 587541	743 bp distal
Rr587542	regulatory region 587542	90 bp proximal
Rr587543	regulatory region 587543	936 bp proximal
Rr587544	regulatory region 587544	1324 bp proximal
Rr587545	regulatory region 587545	1384 bp proximal
Rr587546	regulatory region 587546	1473 bp proximal
Rr587547	regulatory region 587547	1617 bp proximal
Rr587548	regulatory region 587548	1663 bp proximal
Rr587549	regulatory region 587549	1698 bp proximal
Tssr32410	transcription start site region 32410	867 bp upstream
Tssr32411	transcription start site region 32411	1414 bp upstream
Tssr32412	transcription start site region 32412	1484 bp upstream
Tssr32413	transcription start site region 32413	1785 bp upstream
Usp33	ubiquitin specific peptidase 33	960 bp downstream
Zzz3	zinc finger, ZZ domain containing 3	896 bp upstream