rs30109270 SNP Detail

Summary

• ID
  rs30109270
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:38938898 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCAC GCGGCATCAC ACAAATAAAC
  S
  GAGGCAGGGG AATAATCTGA GTGCG                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45396538	mCV25414917	ABI	CRAMUS_MOUSE	f	SNP	G	G	G	C	G
ss134846121	ENSMUSSNP431256	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G		G
ss320724088	CHEV_3_38783671	CHEVERUD	SCREENING_POP	f	SNP						G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30109270					SNP	G	G	G	C	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:38938898 () rs orientation: forward

Symbol	Name	Function Class
C230034O21Rik	RIKEN cDNA C230034O21 gene	within coordinates
Cpgi13105	CpG island 13105	233 bp proximal
Gm56780	predicted gene, 56780	940 bp upstream
Gm65329	predicted gene, 65329	within coordinates
Rr575715	regulatory region 575715	1432 bp distal
Rr575716	regulatory region 575716	1724 bp distal
Rr575717	regulatory region 575717	within coordinates
Rr575718	regulatory region 575718	255 bp distal
Rr575719	regulatory region 575719	787 bp proximal
Rr575720	regulatory region 575720	1353 bp proximal
Rr575721	regulatory region 575721	1701 bp proximal
Tssr28930	transcription start site region 28930	563 bp upstream
Tssr28931	transcription start site region 28931	934 bp upstream
Tssr28932	transcription start site region 28932	961 bp upstream
Tssr28933	transcription start site region 28933	993 bp upstream
Tssr28934	transcription start site region 28934	1094 bp upstream
Tssr28935	transcription start site region 28935	1127 bp upstream
Tssr28936	transcription start site region 28936	1139 bp upstream