rs30109763 SNP Detail

Summary

• ID
  rs30109763
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64128996 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCAGAGCTTC AGGGGATAAG
  TTTACGTGTT TACAGTATAG AGCAAATCTC ATACTCTAAG CTGAGAGGAA GGTTTATTTC
  ATGGAGTAGA GGAAGTTTTG CTTCCTGGAG TGGAAGGAAA ATCCATTTCT TTGACCCACA
  GAGGCCATCT CCCTTGGCCA TCTCCTCTTT CTTTCTCTTG CTTCTAAAAA ACACCAAGGA
  Y
  AGCAGAGTGG ACAAATGGAC ACCATGCTCT TCTTGTCTCC CTCCCACCCC CCAGCCTCTG
  GATCTGGTCC ATTATTTACT TCCTCTGCCT CTCTCCTCAG TGTTCCCCAC ACAGGGGTTC
  CCTTGCTTCT CTACAAAACC ACATGTTCAA CGGCTCCCAT TCAAGCTTCT GCTGTAATTC
  ACCAATGGCC TGCCATCCAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47414934	NES11045981	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T	C	T	T	T	C		T	T	C	T
ss149161603	ENSMUSSNP2635286	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30109763					SNP	T	T	T	T	T	T	T	C	T	T	T	C	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414934	NES11045981	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64128996 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	within coordinates
Rr886	regulatory region 886	918 bp distal
Rr366923	regulatory region 366923	1671 bp downstream
Rr371417	regulatory region 371417	within coordinates
Tssr7078	transcription start site region 7078	1640 bp downstream