rs30110406 SNP Detail

Summary

• ID
  rs30110406
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:47445690 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTGAA TGTTAATTGT TATTGTCTGT
  Y
  CTGGAATTGA AAGAGAAATT GTTGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss45894330	mCV25306644	ABI	CRAMUS_MOUSE	f	SNP		C					T
ss51653634	NES14830137	PERLEGEN	MM_PANEL2	f	SNP	T	C	C	C	T	C		C	C	C	T		C	T		C
ss321792072	CHEV_6_47418755	CHEVERUD	SCREENING_POP	f	SNP												C			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30110406					SNP	T	C	C	C	T	C	T	C	C	C	T	C	C	T	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51653634	NES14830137	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:47445690 () rs orientation: forward

Symbol	Name	Function Class
Cul1	cullin 1	within coordinates
D6Dcr7	DNA Segment, Chr 6, Derry C. Roopenian 7	497 bp proximal
D6Mit352	DNA segment, Chr 6, Massachusetts Institute of Technology 352	500 bp proximal
Tssr56089	transcription start site region 56089	624 bp downstream
Tssr56090	transcription start site region 56090	401 bp downstream