rs30110556 SNP Detail

Summary

• ID
  rs30110556
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64129139 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCCATCTCCC TTGGCCATCT
  CCTCTTTCTT TCTCTTGCTT CTAAAAAACA CCAAGGATAG CAGAGTGGAC AAATGGACAC
  CATGCTCTTC TTGTCTCCCT CCCACCCCCC AGCCTCTGGA TCTGGTCCAT TATTTACTTC
  CTCTGCCTCT CTCCTCAGTG TTCCCCACAC AGGGGTTCCC TTGCTTCTCT ACAAAACCAC
  R
  TGTTCAACGG CTCCCATTCA AGCTTCTGCT GTAATTCACC AATGGCCTGC CATCCATCCC
  CTACTACTTT ACTCAGGCCC CTGCTGACCT GTCTTTCTCT CTGTCTCTCT TTCATTCATT
  ACATTCCTTA GGCAGACAAC ATTCTAAGAC CAAGTACCTT TCCAAACCGT AGTACCTGTA
  CCTGCCCTCC TACTCCCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47414937	NES11045982	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss149161608	ENSMUSSNP3983874	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30110556					SNP	A	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414937	NES11045982	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64129139 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	within coordinates
Rr886	regulatory region 886	1061 bp distal
Rr366923	regulatory region 366923	1814 bp downstream
Rr371417	regulatory region 371417	within coordinates
Tssr7078	transcription start site region 7078	1783 bp downstream