rs30110559 SNP Detail

Summary

• ID
  rs30110559
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64129205 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGACAAATGG ACACCATGCT
  CTTCTTGTCT CCCTCCCACC CCCCAGCCTC TGGATCTGGT CCATTATTTA CTTCCTCTGC
  CTCTCTCCTC AGTGTTCCCC ACACAGGGGT TCCCTTGCTT CTCTACAAAA CCACATGTTC
  AACGGCTCCC ATTCAAGCTT CTGCTGTAAT TCACCAATGG CCTGCCATCC ATCCCCTACT
  R
  CTTTACTCAG GCCCCTGCTG ACCTGTCTTT CTCTCTGTCT CTCTTTCATT CATTACATTC
  CTTAGGCAGA CAACATTCTA AGACCAAGTA CCTTTCCAAA CCGTAGTACC TGTACCTGCC
  CTCCTACTCC CCAGTACATG GGCTCCTGGG TTACTGCACA TCAGCACTGT TTAATCTTTG
  TTTCAGTTCA CTGTTACCTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47414940	NES11045983	PERLEGEN	MM_PANEL2	f	SNP		A	A	A	A	A	G	A	A	A	G		A	A	G	A
ss149161613	ENSMUSSNP1931735	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						A				G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	MSM/Ms	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30110559					SNP	A	A	A	A	A	A	G	A	A	A	G	G	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414940	NES11045983	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64129205 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	within coordinates
Rr886	regulatory region 886	1127 bp distal
Rr366923	regulatory region 366923	1880 bp downstream
Rr371417	regulatory region 371417	within coordinates
Tssr7078	transcription start site region 7078	1849 bp downstream