rs30112037 SNP Detail

Summary

• ID
  rs30112037
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:115922924 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGCT CTGTAGTACA CCAGAAGCTG
  Y
  AGATGTGTGA AATAGGTCAG GAACT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
ss45395781	mCV23276035	ABI	CRAMUS_MOUSE	f	SNP		T				T	C
ss46918419	NES10671991	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	T			C	T		C	C		T
ss135669149	ENSMUSSNP4851930	ENSEMBL	ENSEMBL_Sanger	f	SNP		T					C
ss320894371	CHEV_3_115832193	CHEVERUD	SCREENING_POP	f	SNP										C			T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	SM/J	WSB/EiJ
rs30112037					SNP	T	T	C	C	T	T	C	C	T	C	C	C	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46918419	NES10671991	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:115922924 () rs orientation: forward

Symbol	Name	Function Class
D3Mit215	DNA segment, Chr 3, Massachusetts Institute of Technology 215	1181 bp proximal
Gm43109	predicted gene 43109	within coordinates
Rr583656	regulatory region 583656	1625 bp distal
Rr583657	regulatory region 583657	172 bp proximal
Tssr35297	transcription start site region 35297	100 bp downstream
Tssr35298	transcription start site region 35298	174 bp downstream
Tssr35299	transcription start site region 35299	340 bp downstream
Vcam1	vascular cell adhesion molecule 1	Intron