rs30112395 SNP Detail

Summary

• ID
  rs30112395
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:47414641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATAA TTACTGCTAT TTTAAAATGT
  S
  TTGATTATTG AATGTGAGAC CCTCT                                      
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39152842	mCV23302216	ABI	CRAMUS_MOUSE	f	SNP	G	C	G
ss324594798	CHEV_14_47796859	CHEVERUD	SCREENING_POP	f	SNP				C	G
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30112395					SNP	G	C	G	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:47414641 () rs orientation: forward

Symbol	Name	Function Class
Gch1	GTP cyclohydrolase 1	within coordinates
Gm18811	predicted gene, 18811	699 bp downstream
Rr491339	regulatory region 491339	625 bp proximal
Tssr128307	transcription start site region 128307	1520 bp upstream
Tssr128308	transcription start site region 128308	120 bp downstream
Tssr128309	transcription start site region 128309	654 bp downstream
Tssr128310	transcription start site region 128310	691 bp downstream