rs30112661 SNP Detail

Summary

• ID
  rs30112661
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:86413150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGCTG CCCAGTCTCA CCCAGGCTTC
  R
  GGCTTCCTGG AGGGTCATGC AACCT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
ss39648468	mCV23896679	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss325714170	CHEV_18_86564417	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J	LG/J	SM/J
rs30112661					SNP	A	A	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:86413150 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10352	CpG island 10352	660 bp distal
Cpgi10353	CpG island 10353	within coordinates
Gm54041	predicted gene, 54041	1250 bp upstream
Neto1	neuropilin (NRP) and tolloid (TLL)-like 1	within coordinates
Tg(Ddx4-cre)1Dcas	transgene insertion 1, Diego H Castrillon	within coordinates
Tssr152242	transcription start site region 152242	243 bp downstream
Tssr152243	transcription start site region 152243	222 bp downstream
Tssr152244	transcription start site region 152244	162 bp downstream
Tssr152245	transcription start site region 152245	96 bp downstream
Tssr152246	transcription start site region 152246	57 bp downstream
Tssr152247	transcription start site region 152247	12 bp downstream
Tssr152248	transcription start site region 152248	159 bp upstream
Tssr152249	transcription start site region 152249	250 bp upstream
Tssr152250	transcription start site region 152250	521 bp upstream