rs30113318 SNP Detail

Summary

• ID
  rs30113318
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78522429 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGTTC CCCTTTCCTT CTCTCCCTCC
  Y
  CTTCCTCTCC CGCCTTTCTT TAAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
ss46374130	mCV22795008	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T
ss136669092	ENSMUSSNP1834404	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss323016773	CHEV_9_78462954	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	LG/J	SM/J
rs30113318					SNP	C	C	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78522429 () rs orientation: forward

Symbol	Name	Function Class
Cd109	CD109 antigen	399 bp upstream
Cpgi22073	CpG island 22073	348 bp proximal
Gm69315	predicted gene, 69315	within coordinates
Rr683597	regulatory region 683597	551 bp distal
Rr683598	regulatory region 683598	136 bp proximal
Rr683599	regulatory region 683599	497 bp proximal
Tssr86295	transcription start site region 86295	305 bp upstream
Tssr86296	transcription start site region 86296	335 bp upstream
Tssr86297	transcription start site region 86297	354 bp upstream
Tssr86298	transcription start site region 86298	591 bp upstream
Tssr86299	transcription start site region 86299	610 bp upstream
Tssr86300	transcription start site region 86300	657 bp upstream
Tssr86301	transcription start site region 86301	674 bp upstream
Tssr86302	transcription start site region 86302	690 bp upstream
Tssr90659	transcription start site region 90659	498 bp downstream