rs30113348 SNP Detail

Summary

• ID
  rs30113348
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151994042 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTAAGCGTC TCCTGAAACA
  GGGTAAGATA AAGACAGTTG CTCTGTGCAG AGAGGGACTG GGGAGTAATG AGCTGGAGCT
  GAGTACCACG GGCAAAGGCT AAAGGCAGGC CTGTTCCTCT GGACAAGCCT GCATGAAGTG
  TCATGGTTCC TAACACTCTG AGTGAAGCTC TCAGGAAAGG CTCTGCCTCA CTCAGCCCAG
  W
  GAGGATGAGA CCCAGGCAGT ACGGTCCCTG CTCCACGTTT CCAGTGCTCT GCTCTCCGGC
  CTCTTCCTGA AGAAGCCTGG CTTGAGGAGG TAGCAGCCAC ACCTGGTTAT AGCAGCAGAT
  CTACCAACAG GCCTCACCAG ACATCTCCAG AGGCCACAGG CAGTTCTAAG TTATTACAAA
  TAGCCTGGCC ATGGCATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45398400	mCV24028196	ABI	CRAMUS_MOUSE	f	SNP		A	T				A		A
ss51060150	NES13425296	PERLEGEN	MM_PANEL2	f	SNP	A		T	A	T	A		A	A	A	A	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30113348					SNP	A	A	T	A	T	A	A	A	A	A	A	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51060150	NES13425296	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151994042 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Miga1	mitoguardin 1			Intron
				Noncoding-Transcript-Variant
Rr587515	regulatory region 587515			351 bp distal
Rr587516	regulatory region 587516			437 bp proximal
Tssr32405	transcription start site region 32405			1921 bp upstream