rs30113630 SNP Detail

Summary

• ID
  rs30113630
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:149755793 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTGCTTGAC ATACTGACCC TTCCCTGTAG GTGGTGAGCT
  GAATAAAGTG ATTCAGTGCC TTCAAGAATT TAACATGCAT GTACCCTGTT AACATTACAT
  Y
  GTGGGGCGAT TAGCACATGC CACACTTCAT GCACATGTTT TGAACAATTT GAGTTTTTGA
  AGTTATAATT GTAAAATATT TTTTTGTCTT CTCTGAAGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45397424	mCV24048367	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					T		C
ss51056656	NES13434287	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	T	T		C	C	T	T	T	C	T	T	T
ss136077737	ENSMUSSNP1636867	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30113630					SNP	T	T	T	C	T	T	T	T	C	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss51056656	NES13434287	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:149755793 () rs orientation: forward

Symbol	Name	Function Class
Rr587358	regulatory region 587358	412 bp proximal
Tssr32377	transcription start site region 32377	425 bp downstream