rs30114490 SNP Detail

Summary

• ID
  rs30114490
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:57799812 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGATTAG GCTTTAGACT
  GATGATGTCA GCAGGCTGAC AAGGAAAGCA GGTTGTAGGG GCATTAATAT ACTTTTCACT
  TGAACACAGG AGACAACCAA TTTCCTGCTC CTCTTTCCTC ACCAAGACCA GTGGGCTTTT
  TCCCTGACTG AAAGTATTCA GTGGTCTTTC AAATCTCCCA CAAGAAGCGG GGGAGGGTCC
  Y
  ATAGTAGGAA CCAATCAGCT TGCCTTTCTT TGTCTGGATT ACCCAATCCC CTGTAGTAGC
  CTGAATCAGC CAACTAAGAG GGAAAGGAAG AACTCACCCC ATCCCCAAAC ATAAAACTTT
  AGCACTGCCT GACACAACTC TGATTTCCAG GTCTTCTGCA TTCTCTCTCT CTCTCTCTCT
  CTCTCTCTCT CTCTCTCCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	C57BL/6J	DBA/2J
ss45894912	mCV23275502	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss133245450	ENSMUSSNP1222362	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	C57BL/6J	DBA/2J
rs30114490					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:57799812 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi17487	CpG island 17487			1601 bp proximal
Rr399671	regulatory region 399671			149 bp upstream
Rr631165	regulatory region 631165			within coordinates
Rr631166	regulatory region 631166			660 bp proximal
Rr631167	regulatory region 631167			1354 bp proximal
Rr631168	regulatory region 631168			1642 bp proximal
Tssr56734	transcription start site region 56734			885 bp upstream
Tssr56735	transcription start site region 56735			1658 bp upstream
Tssr56736	transcription start site region 56736			1710 bp upstream
Tssr56737	transcription start site region 56737			1818 bp upstream
Tssr61164	transcription start site region 61164			1806 bp downstream
Vopp1	vesicular, overexpressed in cancer, prosurvival protein 1			Intron
				Noncoding-Transcript-Variant