rs30114917 SNP Detail

Summary

• ID
  rs30114917
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:89315984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGGA ACTACTAGGA CATGCCAGGT
  Y
  CCCGGACTGT CAGCGTGAGC TCTGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45896388	mCV24907696	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C
ss133371788	ENSMUSSNP3139609	ENSEMBL	ENSEMBL_Sanger	f	SNP		C		C
ss321851934	CHEV_6_89288996	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30114917					SNP	C	C	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89315984 () rs orientation: forward

Symbol	Name	Function Class
Plxna1	plexin A1	within coordinates
Rr137390	regulatory region 137390	417 bp proximal
Rr141614	regulatory region 141614	984 bp distal
Rr150843	regulatory region 150843	within coordinates