rs30116071 SNP Detail

Summary

• ID
  rs30116071
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:62313534 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CACCC GCGCCCGCTC ATTCTGGAGA
  Y
  GACAGCTGTC TCCTGGTCCA ACAGA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss39649648	mCV23224858	ABI	CRAMUS_MOUSE	f	SNP	C	T	T
ss147265821	ENSMUSSNP2404859	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
ss325649288	CHEV_18_62340117	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30116071					SNP	C	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:62313534 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Adrb2	adrenergic receptor, beta 2			504 bp upstream
Cpgi10125	CpG island 10125			within coordinates
Gm9949	predicted gene 9949			Coding-NonSynonymous
				Coding-NonSynonymous
				Noncoding-Transcript-Variant
Rr393783	regulatory region 393783			within coordinates
Rr539064	regulatory region 539064			1551 bp distal
Rr539065	regulatory region 539065			1440 bp distal
Rr539066	regulatory region 539066			258 bp distal
Rr539067	regulatory region 539067			within coordinates
Tssr151487	transcription start site region 151487			281 bp downstream
Tssr153623	transcription start site region 153623			477 bp upstream