rs30116215 SNP Detail

Summary

• ID
  rs30116215
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  128
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:38354142 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  CTCTGAAGAT GATCAGACAA GGCAAAGCGA AGTTGGTTAT CCTTGCCAAC AACTGTCCAG
  CTTTGAGGAA ATTTGAAATA GAGTACTATG CCATGTTGGC TAAAACTGGG GTCCATCACT
  ACAGTGGCAA TAATATTGAA CTGGGCACAG CGTGTGGAAA ATACTACAGA GTATGCACAC
  TGGCTATCAT TGACCCAGGT GATTCTGATA TTATTAGAAG CATGCCAGAA CAGACTGGTG
  AGAAGTAAAC AAGAAAGTTT TCCTTTAATA AAACTTTGCC AGAACTCAAA AAAAAAAAAA
  M
  CAAAAAAAAA AAAAAAAAAA AAAAACAAAA CTCTAACATT CTCCCAGCAG CTCATAGCTC
  TGTTAAGAAC TGAGACATAA TTTCTGCCGC GGCTTCTGAG GACTACAGGC ATGCATCAAG
  GTGAAACTGG AGAGATAGAG TTTCAAGAGC ACCCTGTTGA AGAGCGGGAG AATGGCTCAG
  TGGTTAGGAG CACTTGCTGT TCTTGTAGAG GAGCAGGGTT TAGTTCCCAG CACACATATC
  AGGCAGCTCA AAACTGCCTT TAATCCCAGA TCTAAGGAGT GCAACACCCT CTTCTGGCTT
                                                                   
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45895221	mCV24958483	ABI	CRAMUS_MOUSE	f	SNP	C	A	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30116215					SNP	C	A	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:38354142 () rs orientation: forward

Symbol	Name	Function Class
D0Nds34	DNA segment, Nuffield Department of Surgery 34	within coordinates
Rpl30-ps1	ribosomal protein L30, pseudogene 1	53 bp downstream
Rr135132	regulatory region 135132	1859 bp proximal
Rr146156	regulatory region 146156	141 bp distal
Tssr55644	transcription start site region 55644	469 bp downstream