rs30116741 SNP Detail

Summary

• ID
  rs30116741
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:64125878 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACACACTGCT GTCAGAGCTG
  CTGAACTCCA CAAAACAACC AGGGTTCTAG AGCCAATGAA ATTCCTCCTG ACTCTTTCTC
  AGATCCACTG GTTGCCAGAG CTGAAACCAA ATTAAACATT TCCCTCTAGC AATTTGTAAA
  TTCTGAGAGA CAATGCTGTG AAAATTAATT CTAAACAAAC AAAAGTTAGG AAATTTATAG
  M
  AAAACCTCTT TAGTGCTTCT CCTCCCCAAA TCATTTCCAA CATACAAAGA CAACATTAGT
  TTGGATATTT TTTCTTGAGG AAGCCAGGAA GGAAGGAGAT GGGATTAAAG GCCCGGGAAG
  AGGACAGTGT CTTTGAAATT ACTTCCCCTG GGATACACGA TGTACAGCAT CCTCAAATTC
  CCCTTTGATC TCCTGAGGGA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47414910	NES11046119	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30116741					SNP	C	C	C	C	C	C	C	C	C	C	A	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414910	NES11046119	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64125878 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	Intron
Rr886	regulatory region 886	640 bp proximal
Rr366923	regulatory region 366923	1197 bp upstream
Rr412234	regulatory region 412234	1761 bp distal
Rr412235	regulatory region 412235	549 bp distal
Rr412236	regulatory region 412236	813 bp proximal
Tssr7078	transcription start site region 7078	1471 bp upstream