rs30117061 SNP Detail

Summary

• ID
  rs30117061
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:97805479 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGTT TTGTTGTTGT TGTTGTTGTT
  K
  TTTTTTCCTT CTGATTCTGG CCTGA                                      
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45896413	mCV23115505	ABI	CRAMUS_MOUSE	f	SNP	G	T	G	T
ss133421907	ENSMUSSNP6606818	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30117061					SNP	G	T	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97805479 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	within coordinates
Rr635225	regulatory region 635225	417 bp proximal
Tssr1945	transcription start site region 1945	1202 bp downstream
Tssr57866	transcription start site region 57866	1549 bp downstream
Tssr57867	transcription start site region 57867	1276 bp downstream
Tssr57868	transcription start site region 57868	1254 bp downstream
Tssr57869	transcription start site region 57869	1216 bp downstream
Tssr57870	transcription start site region 57870	1057 bp downstream
Tssr57871	transcription start site region 57871	1039 bp downstream
Tssr57872	transcription start site region 57872	269 bp downstream
Tssr57873	transcription start site region 57873	223 bp downstream
Tssr57874	transcription start site region 57874	206 bp downstream
Tssr57875	transcription start site region 57875	186 bp downstream
Tssr57876	transcription start site region 57876	156 bp downstream
Tssr57877	transcription start site region 57877	742 bp upstream
Tssr57878	transcription start site region 57878	786 bp upstream
Tssr57879	transcription start site region 57879	802 bp upstream
Tssr57880	transcription start site region 57880	855 bp upstream
Tssr57881	transcription start site region 57881	1055 bp upstream
Tssr57882	transcription start site region 57882	1153 bp upstream