rs30117377 SNP Detail

Summary

• ID
  rs30117377
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:131198984 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGTGGTGGT AGGCCTGGGT GTGGTGCTAC AGAGCTGTAA
  TCTGAGCCCT GTGTGGGATT GTTAGGATCA AGCAGTCAGA GTCAGCCTGG GCTACATAGT
  R
  AGACCTATCT GGAGAGGGGT TGAGAAGAGA GGACAGCTCG TAGGTAAACA GGTTCCTGTC
  AGTTCCTTTT TGAAGCAAGA GCACACCGTA AATCAGCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45397354	mCV22772250	ABI	CRAMUS_MOUSE	f	SNP	G	G	A
ss135904605	ENSMUSSNP4126869	ENSEMBL	ENSEMBL_Sanger	f	SNP	G		A
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30117377					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:131198984 () rs orientation: forward

Symbol	Name	Function Class
Gm36753	predicted gene, 36753	within coordinates
Rr585352	regulatory region 585352	1940 bp distal
Rr585354	regulatory region 585354	653 bp distal
Rr585355	regulatory region 585355	1986 bp proximal
Sgms2	sphingomyelin synthase 2	1812 bp upstream
Tssr31737	transcription start site region 31737	1655 bp downstream
Tssr35721	transcription start site region 35721	1935 bp upstream
Tssr35722	transcription start site region 35722	1887 bp upstream
Tssr35723	transcription start site region 35723	1825 bp upstream
Tssr35724	transcription start site region 35724	1814 bp upstream
Tssr35725	transcription start site region 35725	1775 bp upstream