rs30117399 SNP Detail

Summary

• ID
  rs30117399
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:142452873 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATCT TTAGAAAGAA AGAGAGGAAG
  R
  AAGAAAGAAA GAAAGAAAGA AAGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
ss45398547	mCV24245045	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	DBA/2J
rs30117399					SNP	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:142452873 () rs orientation: forward

Symbol	Name	Function Class
Gm15540	predicted gene 15540	within coordinates
Rr586478	regulatory region 586478	1921 bp distal
Rr586479	regulatory region 586479	624 bp proximal
Rr586480	regulatory region 586480	1107 bp proximal