rs30117489 SNP Detail

Summary

• ID
  rs30117489
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:68940577 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTGTG TGTGTGCACG CGCGCACACG
  Y
  GTGCAGTTAC TAATATCATT GTAAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46373982	mCV22356763	ABI	CRAMUS_MOUSE	f	SNP	C	C	C	T	C
ss136598733	ENSMUSSNP3903528	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C		C
ss322997346	CHEV_9_68881102	CHEVERUD	SCREENING_POP	f	SNP						C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30117489					SNP	C	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:68940577 () rs orientation: forward

Symbol	Name	Function Class
Rora	RAR-related orphan receptor alpha	Intron
Rr682107	regulatory region 682107	829 bp proximal
Tssr90367	transcription start site region 90367	992 bp downstream
Tssr90368	transcription start site region 90368	1045 bp downstream
Tssr90369	transcription start site region 90369	1159 bp downstream