rs30117644 SNP Detail

Summary

• ID
  rs30117644
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:64126088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAGTGCTTC TCCTCCCCAA
  ATCATTTCCA ACATACAAAG ACAACATTAG TTTGGATATT TTTTCTTGAG GAAGCCAGGA
  AGGAAGGAGA TGGGATTAAA GGCCCGGGAA GAGGACAGTG TCTTTGAAAT TACTTCCCCT
  GGGATACACG ATGTACAGCA TCCTCAAATT CCCCTTTGAT CTCCTGAGGG ATTTTTAGTT
  K
  CAATGCATAC ATAACGTGAA TCCTACAAAC CACTCTGTTC CAAATTTGAC ACTGAAGTCA
  CACAATCAGG GCAAAGCTGG GCAAAGCTGG GCAAAGCTGG GCCCTGGGTT CTAGGCTTCC
  CTCCTTCTCC AAATAGGAAT GCCTTATCCT GGCTCTTACC ATCAATTTTC AAGGTAACAG
  TGTCAACTGG ATGCCACATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47414913	NES11046120	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30117644					SNP	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47414913	NES11046120	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:64126088 () rs orientation: forward

Symbol	Name	Function Class
Gm13748	predicted gene 13748	within coordinates
Klf7	Kruppel-like transcription factor 7 (ubiquitous)	within coordinates
Rr886	regulatory region 886	430 bp proximal
Rr366923	regulatory region 366923	987 bp upstream
Rr371417	regulatory region 371417	1831 bp upstream
Tssr7078	transcription start site region 7078	1261 bp upstream