rs30117761 SNP Detail

Summary

• ID
  rs30117761
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128176374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTCTTCCAG GAAAAAAAAA ATGCCCTTTA AGATACACTT
  AAAAGTTACA GTTCTATTAG TCTTTAAGGC ACAGATGAGA AATGTCTTGA AAAATAATCC
  Y
  AGAACAGGAT GACTCAAGAA CACTGGCTTT TCTTCCAGAG GACCTGGGTT CAATTCCCAT
  CACCCACATG GCAGCTCATG TCTGTAACTC CTGTTTCAG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45895635	mCV24158469	ABI	CRAMUS_MOUSE	f	SNP	C	C	T	C	T
ss133637983	ENSMUSSNP2284921	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T		T
ss321944114	CHEV_6_128149429	CHEVERUD	SCREENING_POP	f	SNP						T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30117761					SNP	C	C	T	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128176374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18048	CpG island 18048	624 bp proximal
Gm10010	predicted gene 10010	within coordinates
Gm66766	predicted gene, 66766	893 bp upstream
Rr399953	regulatory region 399953	1096 bp upstream
Rr639207	regulatory region 639207	510 bp proximal
Rr639208	regulatory region 639208	904 bp proximal
Rr639209	regulatory region 639209	1161 bp proximal
Rr639210	regulatory region 639210	1308 bp proximal
Tssr63410	transcription start site region 63410	1141 bp downstream
Tssr63411	transcription start site region 63411	1163 bp downstream
Tssr63412	transcription start site region 63412	1165 bp downstream
Tssr63413	transcription start site region 63413	1187 bp downstream
Tssr63414	transcription start site region 63414	1227 bp downstream