rs30118808 SNP Detail

Summary

• ID
  rs30118808
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:135286311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CAGAG CTCTGCTCTT TAATGGAGGC
  M
  TAAGACACAG ATACTTGTCC AGCTG                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45896234	mCV24021578	ABI	CRAMUS_MOUSE	f	SNP	C	C	A	C
ss133802832	ENSMUSSNP2221561	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss321986314	CHEV_6_135259331	CHEVERUD	SCREENING_POP	f	SNP					C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30118808					SNP	C	C	A	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:135286311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18093	CpG island 18093	618 bp proximal
Gm36640	predicted gene, 36640	within coordinates
Pbp2	phosphatidylethanolamine binding protein 2	within coordinates
Tssr63760	transcription start site region 63760	1036 bp downstream
Tssr63761	transcription start site region 63761	1061 bp downstream