rs30118982 SNP Detail

Summary

• ID
  rs30118982
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:28422385 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TCACA CTAGTGTGTC GGGGCATTGC
  R
  GAAGTGGTAT AAAGGAGATG AGGCA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
ss45896638	mCV23781324	ABI	CRAMUS_MOUSE	f	SNP	G	A	A
ss133088244	ENSMUSSNP3288350	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A
ss321773886	CHEV_6_28372386	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	DBA/2J	LG/J	SM/J
rs30118982					SNP	G	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:28422385 () rs orientation: forward

Symbol	Name	Function Class
Arf5	ARF GTPase 5	1218 bp upstream
Cpgi17215	CpG island 17215	423 bp distal
Cpgi17216	CpG island 17216	844 bp proximal
Gcc1	golgi coiled coil 1	within coordinates
Rr399587	regulatory region 399587	471 bp downstream
Rr627380	regulatory region 627380	172 bp distal
Rr627381	regulatory region 627381	463 bp distal
Rr627382	regulatory region 627382	684 bp proximal
Rr627383	regulatory region 627383	1745 bp proximal
Tssr55188	transcription start site region 55188	580 bp downstream
Tssr55189	transcription start site region 55189	1148 bp upstream
Tssr55190	transcription start site region 55190	1153 bp upstream
Tssr55191	transcription start site region 55191	1951 bp upstream
Tssr60058	transcription start site region 60058	844 bp upstream
Tssr60059	transcription start site region 60059	794 bp upstream
Tssr60060	transcription start site region 60060	645 bp upstream