rs30119017 SNP Detail

Summary

• ID
  rs30119017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:35906779 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGTAACATGT ATATGTATTT CTAAGACTTT AGTAGTCTTT
  ATGGAGTCTA ATGGAGCATT ATCAATTTGA AATGGTATTG AATTAGACCT GTAAAGATTG
  Y
  CCCCCAAAGC TCGGAAAGGG GAGTTTGGTT TGTGAAATTT TGTAGAGATT CTTTTTTTTT
  TTTTTTTTTT TTTTTTAAGG TGGAGTCTCA CTAGCTCTG                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss39649755	mCV23294427	ABI	CRAMUS_MOUSE	f	SNP		T	T				C		T
ss49278072	NES12722437	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	C		C	T	C	C	C	C	C	C	T
ss146946384	ENSMUSSNP2167141	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30119017					SNP	C	T	T	T	C	C	C	C	T	C	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49278072	NES12722437	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35906779 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9842	CpG island 9842	1233 bp distal
Rr393530	regulatory region 393530	1481 bp downstream
Rr535948	regulatory region 535948	940 bp distal
Tssr150558	transcription start site region 150558	1985 bp downstream
Tssr150559	transcription start site region 150559	1772 bp downstream
Tssr150560	transcription start site region 150560	1595 bp downstream
Tssr150561	transcription start site region 150561	1561 bp downstream
Tssr150562	transcription start site region 150562	75 bp upstream
Ube2d2a	ubiquitin-conjugating enzyme E2D 2A	Intron