rs30119972 SNP Detail

Summary

• ID
  rs30119972
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:151852228 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTATTGCACT CTGGCATCCA
  CATGCCATGA CACATGTCTG AAGGCAGACA GACAGACACA CACACACACA CACACTAACA
  ATTACAACAG TAATAACAAC TTTTAATTAA AAATAAAGGA AACTCTTAAG GCCTAGGTGC
  TGGGAGAGAC TGTGCTTGAA CTACTCTTCT GTGTCTGACA CTGATAACCA TCCCTAGACT
  Y
  TCAGTCTAGG CTTCTAGGGC CATGTCTCAG TCAGGGTTTC TATTCCTGCA CAAACATCAT
  GACCAAGCAA GTTGGAGAGA AAAGGATTTA TTCCGCTTAC TCTTTCTACA TTGCTGTTGA
  TCACCAAAGG AAGTCAGGAC TGGAACTCAA GCAGGTCAGG AAGCAGGAGC TGATGCAGAG
  GCCATGGAGG AATGTTACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45397682	mCV24210684	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
ss136101093	ENSMUSSNP6636625	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T		T
ss321028234	CHEV_3_151809555	CHEVERUD	SCREENING_POP	f	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30119972					SNP	C	T	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:151852228 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gipc2	GIPC PDZ domain containing family, member 2			Intron
				Noncoding-Transcript-Variant
Rr587466	regulatory region 587466			747 bp distal
Rr587467	regulatory region 587467			588 bp proximal
Tssr1099	transcription start site region 1099			786 bp upstream