rs30120019 SNP Detail

Summary

• ID
  rs30120019
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:82602099 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAACTGCCTT CAGTCTTCTA
  GCAGAGAAAA TAAGCAGCTT GTTTTGAGCA AGATAACGAA GCTAAAGCAT TCTCCCTGCA
  AAGGCAATGC TGTGGGCGCC TTAGACCTAG CCACGCCCTG TGGCTCACGG TCAAGGGGCT
  TTGCCTTAAG CTACAAACTC CACTTAGGGC TTTCTGCAGG CGGTGTGACA AATCGAGGGA
  M
  TATTCTGTGT CCTGGGATAT CACTTCCCGC CGGAACAGCT TGTGATTGGA CAACCACAGA
  ACCAGCACTG TGGAGGGGAA GTGTCGCCCC GCAGCTACAC AGGCTTGTGC CTAACTCCTG
  TCTTTTCTTT TTCCCAGGGA GGAAGAGACA GCCGCTCTGG ATCTCCCATG GCGAGACGCT
  GAGAGCCCTC CCCGCTCAGC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39649007	mCV23909311	ABI	CRAMUS_MOUSE	f	SNP	C	A	A	A
ss147616956	ENSMUSSNP559331	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30120019					SNP	C	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:82602099 () rs orientation: forward

Symbol	Name	Function Class
Gm58829	predicted gene, 58829	648 bp downstream
Mbp	myelin basic protein	within coordinates
Rr541827	regulatory region 541827	within coordinates
Tssr152152	transcription start site region 152152	134 bp upstream
Tssr152153	transcription start site region 152153	162 bp upstream
Tssr152154	transcription start site region 152154	276 bp upstream
Tssr152155	transcription start site region 152155	314 bp upstream
Tssr152156	transcription start site region 152156	387 bp upstream
Tssr152157	transcription start site region 152157	438 bp upstream
Tssr152158	transcription start site region 152158	495 bp upstream
Tssr152159	transcription start site region 152159	525 bp upstream
Tssr152160	transcription start site region 152160	575 bp upstream
Tssr152161	transcription start site region 152161	592 bp upstream
Tssr152162	transcription start site region 152162	608 bp upstream
Tssr152163	transcription start site region 152163	633 bp upstream
Tssr152164	transcription start site region 152164	673 bp upstream
Tssr152165	transcription start site region 152165	726 bp upstream
Tssr152166	transcription start site region 152166	792 bp upstream
Tssr152167	transcription start site region 152167	807 bp upstream
Tssr152168	transcription start site region 152168	842 bp upstream
Tssr152169	transcription start site region 152169	903 bp upstream
Tssr152170	transcription start site region 152170	984 bp upstream
Tssr152171	transcription start site region 152171	1044 bp upstream
Tssr152172	transcription start site region 152172	1151 bp upstream
Tssr152173	transcription start site region 152173	1174 bp upstream
Tssr152174	transcription start site region 152174	1192 bp upstream
Tssr152175	transcription start site region 152175	1215 bp upstream
Tssr152176	transcription start site region 152176	1424 bp upstream
Tssr152177	transcription start site region 152177	1592 bp upstream
Tssr154083	transcription start site region 154083	243 bp downstream
Tssr154084	transcription start site region 154084	267 bp downstream
Tssr154085	transcription start site region 154085	539 bp downstream
Tssr154086	transcription start site region 154086	1094 bp downstream
Tssr154087	transcription start site region 154087	1309 bp downstream
Tssr154088	transcription start site region 154088	1349 bp downstream
Tssr154089	transcription start site region 154089	1460 bp downstream
Tssr154090	transcription start site region 154090	1532 bp downstream