rs30120257 SNP Detail

Summary

• ID
  rs30120257
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55146624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGTTCTTCTA TTGTAGGGCT TTCAAGGACC TTAAGACAGG
  GAGAAATCTA CATAGTTTAA AGTGATTGGC ATTTTGCTGG GGCAGTCTCT CAGCTAGTGT
  Y
  TAGCATCTGA CACAACCCAA ATAGCATCTC TGCCATTCTG TCTCTCCATG TGTTTCTTCT
  TCCTTTTTTT TTTTTTCAGA TTTATTTTAT GTATGTGAAG                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47915048	NES11641377	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30120257					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915048	NES11641377	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55146624 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	988 bp downstream
Rr136024	regulatory region 136024	within coordinates
Rr136025	regulatory region 136025	1977 bp proximal
Rr144444	regulatory region 144444	683 bp proximal
Rr144445	regulatory region 144445	1980 bp proximal
Rr149929	regulatory region 149929	1932 bp distal