rs30120299 SNP Detail

Summary

• ID
  rs30120299
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:134808892 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCAAA CTATATCCAT TCTCCTCCCA
  R
  CATCTCACGG ATACTGAAAG AATGT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45895176	mCV24013563	ABI	CRAMUS_MOUSE	f	SNP	G	G	A	G
ss133787619	ENSMUSSNP3249143	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G		G
ss321982544	CHEV_6_134781947	CHEVERUD	SCREENING_POP	f	SNP					G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30120299					SNP	G	G	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:134808892 () rs orientation: forward

Symbol	Name	Function Class
Cpgi18077	CpG island 18077	1286 bp distal
Crebl2	cAMP responsive element binding protein-like 2	within coordinates
Gm67917	predicted gene, 67917	1834 bp upstream
Rr368197	regulatory region 368197	1665 bp downstream
Rr639728	regulatory region 639728	1845 bp distal
Rr639729	regulatory region 639729	1664 bp distal
Rr639730	regulatory region 639730	503 bp distal
Rr639731	regulatory region 639731	1447 bp distal
Tssr59250	transcription start site region 59250	1750 bp downstream
Tssr59251	transcription start site region 59251	1659 bp downstream
Tssr59252	transcription start site region 59252	1592 bp downstream
Tssr59253	transcription start site region 59253	1155 bp downstream
Tssr59254	transcription start site region 59254	893 bp downstream