rs30121277 SNP Detail

Summary

• ID
  rs30121277
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55147260 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCTTGTAA AGGTGACAGT
  CACATATCCT GCTAACTGGA CATTGCTGGC TTTAAATAAC CATTGAAAAC AGAAGCAAGC
  ACTTTTCCTT AGCCAGAAAA TACAATACTT CTGGGTCACT TGAACAGTCC CCCAGGCCTC
  CCACAGAAGG GTCAAGGAAC CCGGAAGCTC TCCACCCCAG CTAGCACATT GCACACATTG
  R
  CATCCCTGTT CTGAACCAGG GCATGGTGAC CAGACTGACT GTGGTTGGCA CCTGCAAGTC
  TGCTGAAGCT GCTGAGACAA GAGACCCTCA AGAGCTGCCT CTGGCCACTG TGAGGGAAGC
  TAGTAGGCAT GGCTAGCTCC CTCAGTAGGT AGGTGACACC ACCTGCGGGC CCCAACATTG
  GCCCCAGCTC CAGCTGCCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47915058	NES11641305	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30121277					SNP	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915058	NES11641305	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55147260 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	352 bp downstream
Rr136024	regulatory region 136024	460 bp distal
Rr136025	regulatory region 136025	1341 bp proximal
Rr144444	regulatory region 144444	47 bp proximal
Rr144445	regulatory region 144445	1344 bp proximal