rs30121279 SNP Detail

Summary

• ID
  rs30121279
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:55147404 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAAGGGTCA AGGAACCCGG
  AAGCTCTCCA CCCCAGCTAG CACATTGCAC ACATTGACAT CCCTGTTCTG AACCAGGGCA
  TGGTGACCAG ACTGACTGTG GTTGGCACCT GCAAGTCTGC TGAAGCTGCT GAGACAAGAG
  ACCCTCAAGA GCTGCCTCTG GCCACTGTGA GGGAAGCTAG TAGGCATGGC TAGCTCCCTC
  R
  GTAGGTAGGT GACACCACCT GCGGGCCCCA ACATTGGCCC CAGCTCCAGC TGCCTCAGAG
  GGAAGGGCTT TGCAGTACAC AGAGCACCAG CCTTTCTCCT GGCCTCTGTC CTGTGCCAGC
  ATTTGTGTTC ATAGCACCTG CTCTTAGATA AATGTTTGTC AGCCAAACCC TTGTCTTTTG
  TTGAGAGAAG GCATCCCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47915060	NES11641306	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30121279					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47915060	NES11641306	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:55147404 () rs orientation: forward

Symbol	Name	Function Class
Inmt	indolethylamine N-methyltransferase	208 bp downstream
Rr136024	regulatory region 136024	604 bp distal
Rr136025	regulatory region 136025	1197 bp proximal
Rr144444	regulatory region 144444	within coordinates
Rr144445	regulatory region 144445	1200 bp proximal